Small Molecule Synthesis — Zenbiochem
Service 1 · Organic synthesis

Small molecule custom synthesis

Our synthetic chemistry team designs and executes multi-step routes to complex organic molecules — applying green chemistry principles throughout to minimise waste, maximise atom efficiency, and deliver compounds of the highest analytical quality. From single-step derivatisations to complex chiral routes, we provide a full service from route design through to delivery with complete documentation.

Available nowmg to kg scaleFull analytical CoA
Synthesis capabilities

Multi-step total synthesis

Routes up to 15+ synthetic steps with full intermediate isolation and characterisation. Protecting group strategies, functional group interconversions, and convergent approaches employed as required.

Stereoselective & chiral synthesis

Asymmetric synthesis using chiral auxiliaries, organocatalysts, and transition-metal catalysts. Enantiopurity confirmed by chiral HPLC and optical rotation. ee routinely ≥99% achievable.

Heterocyclic chemistry

Synthesis of nitrogen-, oxygen-, and sulphur-containing heterocycles — pyrimidines, imidazoles, oxazoles, thiophenes, and fused ring systems central to pharmaceutical drug design.

Cross-coupling reactions

Palladium-, copper-, and nickel-catalysed cross-coupling reactions — Suzuki-Miyaura, Buchwald-Hartwig, Sonogashira, Negishi. Optimised for minimal metal residue in final product.

Scale-up & process chemistry

Routes developed at milligram scale are optimised for kilogram production — identifying bottlenecks, improving yields, substituting hazardous reagents, and reducing process mass intensity.

Reference standards & impurity profiling

Synthesis of authenticated reference standards and potential degradation products for regulatory submissions — HPLC purity ≥99.5% with full mass, NMR, and IR characterisation.

Technical capabilities at a glance

Scale range

1 mg exploratory through to multi-kilogram commercial. Pilot scale (100 g – 1 kg) available for process validation.

Purity standards

Routine ≥98% by HPLC. Reference standards ≥99.5%. Enantiopurity ≥99% ee by chiral HPLC available.

Reaction temperature range

−78°C cryogenic chemistry through to high-temperature sealed-vessel reactions. Microwave synthesis available.

Analytical characterisation

¹H NMR, ¹³C NMR, HPLC-DAD, HRMS/LRMS, IR, optical rotation. Full batch CoA and SDS supplied.

Green chemistry metrics

PMI, E-factor, and atom economy calculated for every project. Solvent selection guided by GSK/CHEM21 solvent guides.

Turnaround

Route proposal within 48 hours of enquiry. Typical project timeline 2–8 weeks depending on complexity and scale.

Example compound classes synthesised
Compound classExamplesScale deliveredTypical purity
Amino acid derivativesFmoc-AA-OH, N-Me amino acids, β-amino acidsmg – kg≥99%
Chiral building blocksChiral diols, amino alcohols, epoxides, lactamsmg – 100 g≥99% ee
HeterocyclesPyrimidines, oxazoles, triazoles, benzimidazolesmg – kg≥98%
Fluorinated compoundsArF, CF₃, DAST fluorinations, perfluoroalkyl chainsmg – 100 g≥98%
Pharmaceutical KSMsAPI intermediates, key starting materialsg – kg≥99%
Reference standardsICH-grade impurities, metabolites, degradation productsmg – g≥99.5%
Have a structure in mind?

Send us your target molecule, required quantity, and timeline — we’ll respond with a route proposal within 48 hours.

ZenBiochem Limited · Custom Synthesis
London BioScience Innovation Centre · 2 Royal College Street, London NW1 0NH · info@zenbiochem.com
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